Package: cyclomort 1.0.2

cyclomort: Survival Modeling with a Periodic Hazard Function

Modeling periodic mortality (or other time-to event) processes from right-censored data. Given observations of a process with a known period (e.g. 365 days, 24 hours), functions determine the number, intensity, timing, and duration of peaks of periods of elevated hazard within a period. The underlying model is a mixed wrapped Cauchy function fitted using maximum likelihoods (details in Gurarie et al. (2020) <doi:10.1111/2041-210X.13305>). The development of these tools was motivated by the strongly seasonal mortality patterns observed in many wild animal populations, such that the respective periods of higher mortality can be identified as "mortality seasons".

Authors:Eliezer Gurarie [aut, cre], Thompson Peter [aut]

cyclomort_1.0.2.tar.gz
cyclomort_1.0.2.zip(r-4.5)cyclomort_1.0.2.zip(r-4.4)cyclomort_1.0.2.zip(r-4.3)
cyclomort_1.0.2.tgz(r-4.4-any)cyclomort_1.0.2.tgz(r-4.3-any)
cyclomort_1.0.2.tar.gz(r-4.5-noble)cyclomort_1.0.2.tar.gz(r-4.4-noble)
cyclomort_1.0.2.tgz(r-4.4-emscripten)cyclomort_1.0.2.tgz(r-4.3-emscripten)
cyclomort.pdf |cyclomort.html
cyclomort/json (API)

# Install 'cyclomort' in R:
install.packages('cyclomort', repos = c('https://eligurarie.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/eligurarie/cyclomort/issues

Datasets:
  • nwt_morts - Mortality data for Northwest territory boreal woodland caribou.
  • seasonalsex - Simulated data of seasonal mortality data for two sex groups
  • timetoeventprediction - Example fitted time to event prediction
  • wah_morts - Mortality data for Western Arctic Herd Caribou

On CRAN:

4.30 score 2 stars 2 scripts 148 downloads 17 exports 57 dependencies

Last updated 4 years agofrom:7e406d63c1. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winNOTENov 14 2024
R-4.5-linuxNOTENov 14 2024
R-4.4-winOKNov 14 2024
R-4.4-macOKNov 14 2024
R-4.3-winOKNov 14 2024
R-4.3-macOKNov 14 2024

Exports:censor_cycloSurvcreate_cycloSurvDeltaToRhofactorfit_cyclomortfindDeltafindRhofit_cyclomortguess_initial_parametersimwciwcloglikeloglike_optimmwcselect_seasonssimulate_cycloSurvtrim_cycloSurvwc

Dependencies:assertthatbbmlebdsmatrixBHclicolorspacecpp11data.tabledeSolvedplyrfansifarverfastGHQuadflexsurvgenericsggplot2gluegtableisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmstatemuhazmunsellmvtnormnlmenumDerivpillarpkgconfigplyrpurrrquadprogR6RColorBrewerRcppRcppArmadillorlangrstpm2scalesstatmodstringistringrsurvivaltibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr

Using cyclomort: A tool for estimating seasonal mortality patterns

Rendered fromcyclomort.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2020-07-23
Started: 2019-02-22