Package: cyclomort 1.0.2
cyclomort: Survival Modeling with a Periodic Hazard Function
Modeling periodic mortality (or other time-to event) processes from right-censored data. Given observations of a process with a known period (e.g. 365 days, 24 hours), functions determine the number, intensity, timing, and duration of peaks of periods of elevated hazard within a period. The underlying model is a mixed wrapped Cauchy function fitted using maximum likelihoods (details in Gurarie et al. (2020) <doi:10.1111/2041-210X.13305>). The development of these tools was motivated by the strongly seasonal mortality patterns observed in many wild animal populations, such that the respective periods of higher mortality can be identified as "mortality seasons".
Authors:
cyclomort_1.0.2.tar.gz
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cyclomort.pdf |cyclomort.html✨
cyclomort/json (API)
# Install 'cyclomort' in R: |
install.packages('cyclomort', repos = c('https://eligurarie.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eligurarie/cyclomort/issues
- nwt_morts - Mortality data for Northwest territory boreal woodland caribou.
- seasonalsex - Simulated data of seasonal mortality data for two sex groups
- timetoeventprediction - Example fitted time to event prediction
- wah_morts - Mortality data for Western Arctic Herd Caribou
Last updated 4 years agofrom:7e406d63c1. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 14 2024 |
R-4.5-win | NOTE | Nov 14 2024 |
R-4.5-linux | NOTE | Nov 14 2024 |
R-4.4-win | OK | Nov 14 2024 |
R-4.4-mac | OK | Nov 14 2024 |
R-4.3-win | OK | Nov 14 2024 |
R-4.3-mac | OK | Nov 14 2024 |
Exports:censor_cycloSurvcreate_cycloSurvDeltaToRhofactorfit_cyclomortfindDeltafindRhofit_cyclomortguess_initial_parametersimwciwcloglikeloglike_optimmwcselect_seasonssimulate_cycloSurvtrim_cycloSurvwc
Dependencies:assertthatbbmlebdsmatrixBHclicolorspacecpp11data.tabledeSolvedplyrfansifarverfastGHQuadflexsurvgenericsggplot2gluegtableisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmstatemuhazmunsellmvtnormnlmenumDerivpillarpkgconfigplyrpurrrquadprogR6RColorBrewerRcppRcppArmadillorlangrstpm2scalesstatmodstringistringrsurvivaltibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr